High frequency of SARS-CoV-2 infection in children admitted to academic hospitals in central South Africa
DOI:
https://doi.org/10.7196/SAMJ.2025.v115i3.2969Keywords:
SARS-CoV-2, Omicron variant, Antibodies , Children, admission diagnosisAbstract
Background. During the COVID‐19 pandemic, the Omicron variant was highly infectious in children, and resulted in high hospital admission rates in this population compared with other SARS‐CoV‐2 variants.
Objective. To investigate the prevalence of SARS‐CoV‐2 infection in children during the Omicron variant wave in Free State Province, South Africa (SA).
Methods. This prospective cross‐sectional study was conducted from August 2022 to April 2023 in the Free State, SA. A total of 320 children admitted at Pelonomi Tertiary Hospital and Universitas Academic Hospital between the ages of 0 and 12 years were recruited. All participants were tested for SARS‐CoV‐2 using the nucleocapsid antibody rapid test. Parent and caregiver vaccination history was also collected.
Results. In our study, 46.8% of the children tested positive for SARS‐CoV‐2. The highest (60%) infection rate was observed in neonates. Children were admitted for various reasons, and none were screened for suspected SARS‐CoV‐2 on admission. Of the infected population, 28% were premature, 12.6% had gastrointestinal tract infections, 12% had respiratory conditions and 10% had central nervous system conditions. A total of 43.3% of the infected children were from vaccinated parents or caregivers.
Conclusion. Our study showed that a high number of hospitalised children tested positive for SARS‐CoV‐2 while admitted for conditions unrelated to COVID‐19. Most, if not all, children did not exhibit COVID‐19‐specific symptoms, and this may be due to the Omicron variant, which was highly infectious but less virulent, and was associated with mild disease.
References
1. Wang H, Paulson KR, Pease SA, et al. Estimating excess mortality due to the COVID‐19 pandemic: A systematic analysis of COVID‐19‐related mortality, 2020 ‐ 21. Lancet 2022;399(10334):1513‐1536. https://doi.org/10.1016/s0140‐6736(21)02796‐3
2. World Health Organization. COVID‐19 weekly epidemiological update 2023. https://www.who. int/publications/m/item/weekly‐epidemiological‐update‐on‐covid‐19‐‐‐18‐may‐2023 (accessed 22 November 2023).
3. Wolter N, Jassat W, Walaza S, et al. Early assessment of the clinical severity of the SARS‐CoV‐2 omicron variant in South Africa: A data linkage study. Lancet 2022;399(10323):437‐446. https://doi. org/10.1016/s0140‐6736(22)00017‐4
4. Rubin R. COVID‐19 vaccines vs variants – determining how much immunity is enough. JAMA 2021;325(13):1241‐1243. https://doi.org/10.1001/jama.2021.3370
5. Tegally H, Wilkinson E, Giovanetti M, et al. Detection of a SARS‐CoV‐2 variant of concern in South Africa. Nature 2021;592(7854):438‐443. https://doi.org/10.1038/s41586‐021‐03402‐9
6. SouthAfricaCOVID‐19ModellingConsortium.COVID‐19modellingupdate:Considerationsforapotential fourth wave. Johannesburg: National Institute for Communicable Diseases, 2021. https://www.nicd.ac.za/wp‐ content/uploads/2021/11/SACMC‐Fourth‐wave‐report‐17112021‐final.pdf (accessed 27 November 2024).
7. Rostami A, Sepidarkish M, Leeflang MM, et al. SARS‐CoV‐2 seroprevalence worldwide: A systematic review and meta‐analysis. Clin Microbiol Infect 2021;27(3):331‐340. https://doi.org/10.1016/j. cmi.2020.10.020
8. Garrett N, Tapley A, Andriesen J, et al. High asymptomatic carriage with the omicron variant in South Africa. Clin Infect Dis 2022;75(1):e289‐e292. https://doi.org/10.1093/cid/ciac237
9. Bittmann S, Luchter E, Moschuring‐Alieva E, Bittmann L, Villalon G. What is new with omicron variant of SARS‐CoV‐2 in children? J Clin Med Res 2022;14(2):108‐109. https://doi.org.10.14740/ jocmr4671
10. Marks KJ. Hospitalisation of infants and children aged 0 ‐ 4 years with laboratory‐confirmed COVID‐19. COVID‐NET, 14 states, March 2020 ‐ February 2022. Morbidity and Mortality Weekly Report 2022;71(11);429‐436. https://doi.org/10.15585/mmwr.mm7111e2
11. Streinu‐Cercel A, Săndulescu O, Miron VD, et al. Undetected Omicron transmission in Romania – report of the first detected case of locally acquired omicron infection and complete epidemiological investigation. Diagnostics 2022;12(2):348. https://doi.org/10.3390/diagnostics12020348
12. Shen N, Wu Y‐F, Chen Y‐W, et al. Clinical characteristics of pediatric cases infected with the SARS‐ CoV‐2 Omicron variant in a tertiary children’s medical center in Shanghai, China. World J Pediatrics 2023;19(1):87‐95. https://doi.org/10.1007/s12519‐022‐00621‐6
13. Han MJ, Heo JH, Hwang JS, Jang Y‐T, Lee M, Kim SJ. Incidence of febrile seizures in children with COVID‐19. J Clin Med 2023;12(3):1076. https://doi.org/10.3390/jcm12031076
14. Iijima H, Kubota M, Ogimi C. Change in seizure incidence in febrile children with COVID‐19 in the era of omicron variant of concern. J Pediatric Infect Dis Soc 2022;11(11):514‐517. https://doi. org/10.1093/jpids/piac085
15. Cloete J, Kruger A, Masha M, et al. Paediatric hospitalisations due to COVID‐19 during the first SARS‐ CoV‐2 omicron (B. 1.1. 529) variant wave in South Africa: A multicentre observational study. Lancet Child Adolesc Health 2022;6(5):294‐302. https://doi.org/10.1016/S2352‐4642(22)00027‐X.
16. Pediatric COVID‐19 Case Registry. Pediatric COVID‐19 US Registry. Collaboration is our strategy. Children are our priority. PCCR, 2022. https://www.pedscovid19registry.com/ (accessed 23 July 2024). 17. Berni Canani R, Comegna M, Paparo L, et al. Age‐related differences in the expression of most relevant mediators of SARS‐CoV‐2 infection in human respiratory and gastrointestinal tract. Front Pediatr
2021:28(9):697390. https://doi.org/ 10.3389/fped.2021.697390.eCollection 2021
18. Bunyavanich S, Do A, Vicencio A. Nasal gene expression of angiotensin‐converting enzyme 2 in
children and adults. JAMA 2020;323(23):2427‐2429. https://doi.org/10.1001/jama.2020.8707
19. Patel AB, Verma A. Nasal ACE2 levels and COVID‐19 in children. JAMA 2020;323(23):2386‐2387.
https://doi.org/10.1001/jama.2020.8946
20. She J, Liu L, Liu W. COVID‐19 epidemic: Disease characteristics in children. J Med Virol 2020;92(7):747‐54. https://doi.org/10.1002/jmv.25807
21. Colonna C, Monzani NA, Rocchi A, Gianotti R, Boggio F, Gelmetti C. Chilblain‐like lesions in children following suspected COVID‐19 infection. Pediatr Dermatol 2020;37(3):437‐440. https://doi. org/10.1111/pde.14210
22. Chou J, Thomas PG, Randolph AG. Immunology of SARS‐CoV‐2 infection in children. Nature Immunol 2022:23;177‐185. https://doi.org/10.1038/s41590‐021‐01123‐9
23. Chung E, Chow EJ, Wilcox NC, et al. Comparison of symptoms and RNA levels in children and adults with SARS‐CoV‐2 infection in the community setting. JAMA Pediatr 2021;175(10):e212025‐e. https:// doi.org/10.1001/jamapediatrics.2021.2025
24. Pierce CA, Preston‐Hurlburt P, Dai Y, et al. Immune responses to SARS‐CoV‐2 infection in hospitalised pediatric and adult patients. Sci Translat Med 2020;12(564):eabd5487. https://doi. org/10.1126/scitranslmed.abd5487
25. Coronavirus Disease (COVID‐19) Pandemic. Update of COVID‐19 in children and adolescents ≤18 years, South Africa, 1 March 2020 ‐ 15 January 2022. Pretoria: National Institute for Communicable Diseases, 2022. https://www.nicd.ac.za/wp‐content/uploads/2022/01/Update‐of‐COVID‐19‐in‐ children‐and‐adolescents‐%E2%89%A418.pdf (accessed 22 July 2024).
26. Babaei R, Bokharaei‐Salim F, Khanaliha K, et al. Prevalence of SARS‐CoV‐2 infection in neonates born to mothers or relatives with COVID‐19. BMC Infect Dis 2022;22(1):730. https://doi.org/10.1186/ s12879‐022‐07688‐6
27. Gale C, Quigley MA, Placzek A, et al. Characteristics and outcomes of neonatal SARS‐CoV‐2 infection in the UK: A prospective national cohort study using active surveillance. Lancet Child Adolescent Health 2021;5(2):113‐121. https://doi.org/10.1016/S2352‐4642(20)30342‐4
28. LiuX,WangJ,XuX,LiaoG,ChenY,HuC‐H.PatternsofIgGandIgMantibodyresponseinCOVID‐19 patients. Emerg Microbes Infect 2020;9(1):1269‐1274. https://doi.org/10.1080/22221751.2020.1773324
29. Li G, Chen X, Xu A. Profile of specific antibodies to the SARS‐associated coronavirus. N Engl J Med 2003;349(5):508‐509. https://doi.org/10.1056/NEJM200307313490520
30. Singh P, Singh SN, Singh K, et al. Epidemiological and clinical features among COVID‐19‐positive children in Eastern Uttar Pradesh (India): An observational study. Pediatr Infect Dis 2024;6(3):73‐79. https://doi.org/10.5005/jp‐journals‐10081‐1431
31. Zambrano LD, Ellington S, Strid P, et al. Update: characteristics of symptomatic women of reproductive age with laboratory‐confirmed SARS‐CoV‐2 infection by pregnancy status – United States, January 22 ‐ October 3, 2020. Morbidity and Mortality Weekly Report 2020;69(44):1641. https://doi.org/10.15585/mmwr.mm6944e332. Allotey J, Fernandez S, Bonet M, et al. Clinical manifestations, risk factors, and maternal and perinatal outcomes of coronavirus disease 2019 in pregnancy: Living systematic review and meta‐analysis. BMJ 2020;1:370:m3320. https://doi.org/10.1136/bmj.m3320
33. Metz TD, Clifton RG, Hughes BL, et al. Disease severity and perinatal outcomes of pregnant patients with coronavirus disease 2019 (COVID‐19). Obstet Gynecol 2021;137(4):571‐580. https://doi. org/10.1097/AOG.0000000000004339
34. Villar J, Ariff S, Gunier RB, et al. Maternal and neonatal morbidity and mortality among pregnant women with and without COVID‐19 infection: The INTERCOVID multinational cohort study. JAMA Pediatr 2021;175(8):817‐826. https://doi.org/10.1001/jamapediatrics.2021.1050
35. Al‐Matary A, Almatari F, Al‐Matary M, et al. Clinical outcomes of maternal and neonate with COVID‐19 infection – multicenter study in Saudi Arabia. J Infect Public Health 2021;14(6):702‐708. https://doi.org/10.1016/j.jiph.2021.03.013
36. Ryan L, Plötz FB, van den Hoogen A, et al. Neonates and COVID‐19: State of the art: Neonatal sepsis series. Pediatr Res 2022;91(2):432‐439. https://doi.org/10.1038/s41390‐021‐01875‐y
37. Peng Z, Zhang J, Shi Y, Yi M. Research progress in vertical transmission of SARS‐CoV‐2 among infants born to mothers with COVID‐19. Future Virol 2022;17(4):211‐214. https://doi.org/10.2217/ fvl‐2021‐0213
38. Ulrich H, Pillat MM. CD147 as a target for COVID‐19 treatment: Suggested effects of azithromycin and stem cell engagement. Stem Cell Rev Rep 2020;16(3):434‐440. https://doi.org/10.1007/s12015‐ 020‐09976‐7
39. Li Y, Zhang Z, Yang L, et al. The MERS‐CoV receptor DPP4 as a candidate binding target of the SARS‐ CoV‐2 spike. Iscience 2020;23(6):101160. https://doi.org/10.1016/j.isci.2020.101160
40. National Department of Health, South Africa. COVID‐19 public dashboard. Pretoria: NDoH, 2021. https://www.nicd.ac.za/diseases‐a‐z‐index/disease‐index‐covid‐19/surveillance‐reports/ (accessed 12 August 2024).
41. Beharier O, Mayo RP, Raz T, et al. Efficient maternal to neonatal transfer of antibodies against SARS‐ CoV‐2 and BNT162b2 mRNA COVID‐19 vaccine. J Clin Investigation 2021; 131(13):e150319. https:// doi.org/10.1172/JCI150319
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